Variant report

Variant	rs4592217
Chromosome Location	chr1:73498942-73498943
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10493513	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10493514	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10889999	0.88[EUR][1000 genomes]
rs11210101	0.89[ASN][1000 genomes]
rs11210103	0.87[EUR][1000 genomes]
rs11210114	0.86[EUR][1000 genomes]
rs11210115	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11210117	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11210118	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11210119	0.89[EUR][1000 genomes]
rs11210120	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11210127	0.81[EUR][1000 genomes]
rs11210128	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11210143	0.84[EUR][1000 genomes]
rs11210168	0.81[EUR][1000 genomes]
rs11577664	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11582461	0.81[EUR][1000 genomes]
rs11589897	0.81[EUR][1000 genomes]
rs12033354	0.81[EUR][1000 genomes]
rs12044276	0.84[EUR][1000 genomes]
rs12118981	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12122055	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12122520	0.81[EUR][1000 genomes]
rs12124553	0.81[EUR][1000 genomes]
rs12128855	0.81[EUR][1000 genomes]
rs12136496	0.81[EUR][1000 genomes]
rs12137361	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12137741	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12143587	0.84[EUR][1000 genomes]
rs12405997	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12724056	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12729632	0.88[EUR][1000 genomes]
rs12745861	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12748124	0.88[EUR][1000 genomes]
rs34477433	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35531383	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36093886	0.88[EUR][1000 genomes]
rs4130885	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4233096	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4233101	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4233103	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4263954	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4298682	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4328030	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4344272	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4344273	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4355999	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4391625	0.84[EUR][1000 genomes]
rs4409593	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4425940	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4456055	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4469676	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4477222	0.84[EUR][1000 genomes]
rs4492565	0.81[EUR][1000 genomes]
rs4559446	0.88[EUR][1000 genomes]
rs4593762	0.81[EUR][1000 genomes]
rs4603080	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4622012	0.84[EUR][1000 genomes]
rs4649972	0.92[ASN][1000 genomes]
rs4649975	0.89[EUR][1000 genomes]
rs4649976	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4650188	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4650193	0.81[EUR][1000 genomes]
rs4650194	0.81[EUR][1000 genomes]
rs4650196	0.81[EUR][1000 genomes]
rs61772284	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61772326	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6424508	0.88[EUR][1000 genomes]
rs6662171	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6670428	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6682845	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6690119	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6699861	0.80[EUR][1000 genomes]
rs67437638	0.80[EUR][1000 genomes]
rs7516446	0.87[EUR][1000 genomes]
rs7519995	0.86[EUR][1000 genomes]
rs7526372	0.86[EUR][1000 genomes]
rs7528197	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7528312	0.89[EUR][1000 genomes]
rs7540296	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7552256	0.86[EUR][1000 genomes]
rs7554291	0.84[EUR][1000 genomes]
rs9645298	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9919151	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012319	chr1:73337418-73547086	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73498000-73501000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr1:73498200-73501000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr1:73498400-73500000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr1:73498400-73500600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr1:73498400-73500800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr1:73498400-73501000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr1:73498400-73501000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr1:73498600-73499800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr1:73498600-73500200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr1:73498800-73499000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr1:73498800-73499800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr1:73498800-73500600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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