Variant report

Variant	rs35531383
Chromosome Location	chr1:73445167-73445168
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10493513	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10493514	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11210099	0.85[EUR][1000 genomes]
rs11210100	0.89[EUR][1000 genomes]
rs11210101	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11210115	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11210117	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11210118	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11210120	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11210128	0.81[ASN][1000 genomes]
rs11577664	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11803263	0.86[EUR][1000 genomes]
rs12025473	0.88[EUR][1000 genomes]
rs12042865	0.87[EUR][1000 genomes]
rs12118981	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12122055	0.83[ASN][1000 genomes]
rs12122377	0.91[EUR][1000 genomes]
rs12136682	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12137361	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12137741	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12405997	0.91[ASN][1000 genomes]
rs12724056	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12724536	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12745861	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34477433	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4130885	0.81[ASN][1000 genomes]
rs4233093	0.81[EUR][1000 genomes]
rs4233096	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4233101	0.81[ASN][1000 genomes]
rs4233103	0.81[ASN][1000 genomes]
rs4263954	0.81[ASN][1000 genomes]
rs4269731	0.82[EUR][1000 genomes]
rs4298682	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4328030	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4344272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4344273	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4355999	0.81[ASN][1000 genomes]
rs4409593	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4456055	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4469676	0.81[ASN][1000 genomes]
rs4579707	0.86[EUR][1000 genomes]
rs4589057	0.89[EUR][1000 genomes]
rs4592217	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4603080	0.81[ASN][1000 genomes]
rs4649972	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4649976	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4650188	0.81[ASN][1000 genomes]
rs61772284	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61772326	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61774086	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6424507	0.87[EUR][1000 genomes]
rs6657069	0.83[EUR][1000 genomes]
rs6662171	0.81[ASN][1000 genomes]
rs6667006	0.90[EUR][1000 genomes]
rs6667756	0.88[EUR][1000 genomes]
rs6670428	0.90[AFR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66820357	0.86[EUR][1000 genomes]
rs6682845	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6690119	0.81[ASN][1000 genomes]
rs7516673	0.86[EUR][1000 genomes]
rs7528197	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7528791	0.89[EUR][1000 genomes]
rs7536364	0.87[EUR][1000 genomes]
rs7540296	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7540420	0.89[EUR][1000 genomes]
rs9645298	0.81[ASN][1000 genomes]
rs9970090	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012319	chr1:73337418-73547086	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73429400-73445400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:73442200-73447600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:73443000-73451200	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr1:73443000-73451800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:73443400-73445200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr1:73444000-73446000	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
7	chr1:73444200-73447400	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr1:73445000-73445400	Active TSS	HUES48 Cell Line	embryonic stem cell

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