Variant report

Variant	rs4589057
Chromosome Location	chr1:73412289-73412290
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10493513	0.92[EUR][1000 genomes]
rs10493514	0.92[EUR][1000 genomes]
rs10889999	0.86[ASN][1000 genomes]
rs11210084	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11210085	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11210099	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11210100	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11210103	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11210107	0.83[ASN][1000 genomes]
rs11210114	0.84[ASN][1000 genomes]
rs11210119	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11577664	0.86[EUR][1000 genomes]
rs11803263	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12025473	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12042865	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12044276	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12122377	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12137361	0.91[EUR][1000 genomes]
rs12567284	0.83[ASN][1000 genomes]
rs12724056	0.92[EUR][1000 genomes]
rs12724536	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12729632	0.86[ASN][1000 genomes]
rs12745861	0.92[EUR][1000 genomes]
rs12748124	0.86[ASN][1000 genomes]
rs1464952	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35531383	0.89[EUR][1000 genomes]
rs36093886	0.86[ASN][1000 genomes]
rs4233093	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4269731	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4328030	0.89[EUR][1000 genomes]
rs4344272	0.89[EUR][1000 genomes]
rs4409593	0.89[EUR][1000 genomes]
rs4456055	0.89[EUR][1000 genomes]
rs4559446	0.83[ASN][1000 genomes]
rs4579707	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4649972	0.87[EUR][1000 genomes]
rs4649975	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61772284	0.91[EUR][1000 genomes]
rs61772326	0.86[EUR][1000 genomes]
rs6424507	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6424508	0.86[ASN][1000 genomes]
rs6657069	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6667006	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6667756	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66820357	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6682845	0.92[EUR][1000 genomes]
rs6689491	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6693460	0.85[ASN][1000 genomes]
rs6694433	0.83[EUR][1000 genomes]
rs7516446	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7516673	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7519995	0.86[ASN][1000 genomes]
rs7525662	0.88[ASN][1000 genomes]
rs7526372	0.86[ASN][1000 genomes]
rs7528312	0.88[ASN][1000 genomes]
rs7528791	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7536364	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7540296	0.87[EUR][1000 genomes]
rs7540420	0.80[AFR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7552256	0.86[ASN][1000 genomes]
rs9919151	0.86[ASN][1000 genomes]
rs9970090	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012319	chr1:73337418-73547086	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73410200-73412400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:73410200-73412800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr1:73410200-73416200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:73412000-73413200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr1:73412000-73413400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr1:73412000-73413800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:73412200-73413200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr1:73412200-73413400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:73412200-73413400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr1:73412200-73413400	Enhancers	HUES64 Cell Line	embryonic stem cell

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