Variant report

Variant	rs6689491
Chromosome Location	chr1:73352029-73352030
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:73349931..73352459-chr1:73352891..73354785,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11210084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11210085	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11210099	0.82[ASN][1000 genomes]
rs11210100	0.83[ASN][1000 genomes]
rs11803263	0.82[ASN][1000 genomes]
rs12025473	0.80[ASN][1000 genomes]
rs12039928	0.95[ASN][1000 genomes]
rs12042865	0.81[ASN][1000 genomes]
rs12044276	0.80[ASN][1000 genomes]
rs12122377	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12129026	0.81[EUR][1000 genomes]
rs12129942	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12136682	0.91[EUR][1000 genomes]
rs12724536	0.84[ASN][1000 genomes]
rs1464952	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1525978	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1525979	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1917881	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2841192	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2901713	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4233093	0.82[ASN][1000 genomes]
rs4579707	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4589057	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61774086	0.91[EUR][1000 genomes]
rs6424507	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6656687	0.82[EUR][1000 genomes]
rs6667006	0.81[ASN][1000 genomes]
rs6667756	0.86[ASN][1000 genomes]
rs66820357	0.82[ASN][1000 genomes]
rs7516673	0.82[ASN][1000 genomes]
rs7528791	0.82[ASN][1000 genomes]
rs7536364	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7540420	0.84[ASN][1000 genomes]
rs7546928	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs940917	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9970090	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013549	chr1:73209040-73408373	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1012319	chr1:73337418-73547086	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73350800-73352200	Enhancers	Hela-S3	cervix

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