Variant report

Variant	rs7540296
Chromosome Location	chr1:73447725-73447726
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10493513	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10493514	0.93[AFR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11210099	0.83[EUR][1000 genomes]
rs11210100	0.87[EUR][1000 genomes]
rs11210101	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11210115	0.89[ASN][1000 genomes]
rs11210117	0.88[ASN][1000 genomes]
rs11210118	0.89[ASN][1000 genomes]
rs11210120	0.89[ASN][1000 genomes]
rs11577664	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11803263	0.84[EUR][1000 genomes]
rs12025473	0.86[EUR][1000 genomes]
rs12042865	0.85[EUR][1000 genomes]
rs12118981	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12122055	0.82[ASN][1000 genomes]
rs12122377	0.88[EUR][1000 genomes]
rs12136682	0.81[ASN][1000 genomes]
rs12137361	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12137741	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12405997	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12724056	0.96[AFR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12724536	0.90[EUR][1000 genomes]
rs12745861	0.96[AFR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34477433	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35531383	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4233093	0.84[EUR][1000 genomes]
rs4233096	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4269731	0.80[EUR][1000 genomes]
rs4298682	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4328030	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4344272	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4344273	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4409593	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4456055	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4579707	0.84[EUR][1000 genomes]
rs4589057	0.87[EUR][1000 genomes]
rs4592217	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4649972	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4649976	0.89[ASN][1000 genomes]
rs61772284	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61772326	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61772328	0.81[AFR][1000 genomes]
rs61774086	0.83[ASN][1000 genomes]
rs6424507	0.84[EUR][1000 genomes]
rs6657069	0.80[EUR][1000 genomes]
rs6667006	0.88[EUR][1000 genomes]
rs6667756	0.86[EUR][1000 genomes]
rs6670428	0.93[AFR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66820357	0.84[EUR][1000 genomes]
rs6682845	0.96[AFR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7516673	0.84[EUR][1000 genomes]
rs7528197	0.89[ASN][1000 genomes]
rs7528791	0.91[EUR][1000 genomes]
rs7536364	0.84[EUR][1000 genomes]
rs7540420	0.91[EUR][1000 genomes]
rs9970090	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012319	chr1:73337418-73547086	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv945881	chr1:73446047-73452705	Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73443000-73451200	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr1:73443000-73451800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:73446000-73451200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr1:73446200-73448600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:73446200-73448600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr1:73446600-73450400	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
7	chr1:73447400-73447800	Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr1:73447400-73448000	Transcr. at gene 5' and 3'	ES-I3 Cell Line	embryonic stem cell
9	chr1:73447600-73447800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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