Variant report
| Variant | rs12049207 |
|---|---|
| Chromosome Location | chr1:166727869-166727870 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:5)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:5 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | FOS | chr1:166727708-166728010 | MCF10A-Er-Src | breast: | n/a | chr1:166727816-166727823 chr1:166727816-166727824 |
| 2 | FOS | chr1:166727734-166728010 | MCF10A-Er-Src | breast: | n/a | chr1:166727816-166727823 chr1:166727816-166727824 |
| 3 | FOS | chr1:166727741-166728016 | MCF10A-Er-Src | breast: | n/a | chr1:166727816-166727823 chr1:166727816-166727824 |
| 4 | STAT3 | chr1:166727815-166728010 | MCF10A-Er-Src | breast: | n/a | n/a |
| 5 | FOS | chr1:166727748-166727999 | MCF10A-Er-Src | breast: | n/a | chr1:166727816-166727823 chr1:166727816-166727824 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| FMO11P | TF binding region |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs12041825 | 0.83[ASN][1000 genomes] |
| rs1883119 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs477967 | 0.81[ASN][1000 genomes] |
| rs480820 | 0.96[ASN][1000 genomes] |
| rs529187 | 0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs529308 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs529540 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs533062 | 0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs533094 | 0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs540996 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs545724 | 0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs569013 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs569129 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs572582 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916491 | chr1:166000783-166948513 | Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
| 2 | nsv946425 | chr1:166720534-166732142 | Inactive region | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
