Variant report
| Variant | rs545724 |
|---|---|
| Chromosome Location | chr1:166714821-166714822 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:4)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:4 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CBX3 | chr1:166714794-166715113 | K562 | blood: | n/a | n/a |
| 2 | KAP1 | chr1:166714459-166715250 | K562 | blood: | n/a | n/a |
| 3 | JUN | chr1:166714803-166714998 | K562 | blood: | n/a | n/a |
| 4 | SETDB1 | chr1:166714724-166715893 | U2OS | brain: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RPL4P2 | TF binding region |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs12041825 | 0.86[ASN][1000 genomes] |
| rs12049207 | 0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1883119 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs477967 | 0.83[ASN][1000 genomes] |
| rs480820 | 0.93[ASN][1000 genomes] |
| rs529187 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs529308 | 0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs529540 | 0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs533062 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs533094 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs540996 | 0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs569013 | 0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs569129 | 0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs572582 | 0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916491 | chr1:166000783-166948513 | Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
| 2 | nsv946485 | chr1:166713395-166717578 | ZNF genes & repeats | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
