Variant report

Variant	rs569129
Chromosome Location	chr1:166739990-166739991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:166734218..166736555-chr1:166738844..166741409,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10918584	1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs12040139	0.82[ASN][1000 genomes]
rs12040693	0.82[ASN][1000 genomes]
rs12041825	0.81[ASN][1000 genomes]
rs12049207	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1883119	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs479441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs480820	0.98[ASN][1000 genomes]
rs506167	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs514704	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap]
rs526740	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap]
rs529187	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs529308	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs529540	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs533062	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs533094	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs540996	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs545724	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs562445	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap]
rs563244	0.82[TSI][hapmap]
rs569013	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs572582	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166739400-166740000	ZNF genes & repeats	Gastric	stomach
2	chr1:166739400-166740200	ZNF genes & repeats	Lung	lung
3	chr1:166739400-166740400	ZNF genes & repeats	Adipose Nuclei	Adipose
4	chr1:166739600-166740000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:166739600-166740000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:166739600-166740200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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