The 2.0 version of rSNPBase

Variant report

Variant rs12054242
Chromosome Location chr3:56804257-56804258
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:95 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:56764000-56815800 Weak transcription Fetal Intestine Small intestine
2 chr3:56789200-56805800 Weak transcription Stomach Smooth Muscle stomach
3 chr3:56790200-56804600 Weak transcription Rectal Mucosa Donor 31 rectum
4 chr3:56792600-56809600 Weak transcription Small Intestine intestine
5 chr3:56793000-56804600 Weak transcription Primary hematopoietic stem cells short term culture blood
6 chr3:56793200-56806000 Weak transcription Duodenum Mucosa Duodenum
7 chr3:56793200-56807200 Weak transcription HUVEC blood vessel
8 chr3:56793200-56817400 Weak transcription Hela-S3 cervix
9 chr3:56793600-56805400 Weak transcription Esophagus oesophagus
10 chr3:56793600-56809600 Weak transcription Primary hematopoietic stem cells blood
11 chr3:56793800-56805600 Weak transcription Primary B cells from cord blood blood
12 chr3:56796400-56805400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
13 chr3:56796400-56807600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
14 chr3:56796600-56809800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
15 chr3:56796800-56809600 Weak transcription NHLF lung
16 chr3:56796800-56816400 Weak transcription Colonic Mucosa Colon
17 chr3:56797000-56805200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
18 chr3:56797200-56805200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
19 chr3:56797200-56805200 Weak transcription Placenta Placenta
20 chr3:56797200-56809200 Weak transcription Duodenum Smooth Muscle Duodenum
21 chr3:56797400-56805400 Weak transcription Gastric stomach
22 chr3:56797600-56811400 Weak transcription Stomach Mucosa stomach
23 chr3:56798400-56804400 Genic enhancers Primary T cells fromperipheralblood blood
24 chr3:56798400-56804600 Weak transcription Primary B cells from peripheral blood blood
25 chr3:56799000-56815800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
26 chr3:56800400-56807000 Weak transcription Fetal Intestine Large intestine
27 chr3:56800600-56805600 Weak transcription Sigmoid Colon Sigmoid Colon
28 chr3:56800800-56804600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr3:56800800-56808200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr3:56800800-56809000 Weak transcription Pancreatic Islets Pancreatic Islet
31 chr3:56801000-56804600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr3:56801000-56805400 Strong transcription Primary T helper 17 cells PMA-I stimulated --
33 chr3:56801600-56808200 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
34 chr3:56801800-56805800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
35 chr3:56802000-56806400 Genic enhancers Primary Natural Killer cells fromperipheralblood blood
36 chr3:56802000-56806600 Genic enhancers Primary T helper cells PMA-I stimulated --
37 chr3:56802400-56804600 Weak transcription Primary monocytes fromperipheralblood blood
38 chr3:56802600-56804400 Genic enhancers Primary T helper naive cells fromperipheralblood blood
39 chr3:56802600-56805600 Strong transcription Primary T cells from cord blood blood
40 chr3:56802600-56811800 Strong transcription Dnd41 blood
41 chr3:56802800-56804800 Genic enhancers Primary T helper naive cells from peripheral blood blood
42 chr3:56802800-56804800 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
43 chr3:56802800-56804800 Enhancers Skeletal Muscle Male skeletal muscle
44 chr3:56802800-56807400 Strong transcription Fetal Adrenal Gland Adrenal Gland
45 chr3:56802800-56807600 Strong transcription Monocytes-CD14+_RO01746 blood
46 chr3:56802800-56808000 Strong transcription HMEC breast
47 chr3:56803200-56807400 Strong transcription Lung lung
48 chr3:56803200-56808600 Strong transcription Fetal Stomach stomach
49 chr3:56803200-56809200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
50 chr3:56803200-56809600 Strong transcription Thymus Thymus

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Last update: Aug 31, 2015