Variant report

Variant	rs17235733
Chromosome Location	chr3:56826765-56826766
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10510788	0.85[CEU][hapmap]
rs1110866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11130547	0.81[AMR][1000 genomes]
rs12054242	0.81[AMR][1000 genomes]
rs17216768	0.84[CEU][hapmap];0.88[YRI][hapmap]
rs17288908	0.85[CEU][hapmap]
rs2317250	0.85[CEU][hapmap]
rs35550387	0.83[AMR][1000 genomes]
rs55837354	0.83[AMR][1000 genomes]
rs55993130	0.84[AMR][1000 genomes]
rs56134339	0.83[AMR][1000 genomes]
rs56201611	0.83[AMR][1000 genomes]
rs62252679	0.81[AMR][1000 genomes]
rs6795927	0.82[AMR][1000 genomes]
rs7611544	0.85[CEU][hapmap];0.83[AMR][1000 genomes]
rs7625636	0.85[CEU][hapmap];0.86[AMR][1000 genomes]
rs7629147	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs984796	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876818	chr3:56805376-56924711	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56807000-56833200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:56814600-56826800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
3	chr3:56816200-56827000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr3:56818000-56827000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr3:56818200-56826800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr3:56818200-56829400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr3:56818600-56829000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr3:56818600-56832000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr3:56819000-56829000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr3:56819000-56830400	Weak transcription	HSMM	muscle
11	chr3:56819200-56834400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr3:56819600-56829000	Weak transcription	Placenta	Placenta
13	chr3:56819800-56828000	Enhancers	Primary T cells fromperipheralblood	blood
14	chr3:56820400-56829000	Weak transcription	Fetal Kidney	kidney
15	chr3:56820600-56834600	Weak transcription	NHDF-Ad	bronchial
16	chr3:56820800-56828000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:56821000-56830400	Weak transcription	Fetal Brain Female	brain
18	chr3:56821600-56829000	Weak transcription	Small Intestine	intestine
19	chr3:56822400-56827600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr3:56822400-56829000	Weak transcription	Adipose Nuclei	Adipose
21	chr3:56822400-56833200	Weak transcription	Fetal Stomach	stomach
22	chr3:56822800-56833200	Weak transcription	Duodenum Mucosa	Duodenum
23	chr3:56823400-56828200	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr3:56823400-56829600	Weak transcription	Fetal Brain Male	brain
25	chr3:56823400-56833200	Weak transcription	Fetal Muscle Leg	muscle
26	chr3:56823600-56829000	Weak transcription	Stomach Mucosa	stomach
27	chr3:56823800-56826800	Flanking Active TSS	Dnd41	blood
28	chr3:56823800-56826800	Enhancers	HepG2	liver
29	chr3:56823800-56827000	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr3:56824000-56827400	Enhancers	Pancreas	Pancrea
31	chr3:56824400-56829200	Weak transcription	Esophagus	oesophagus
32	chr3:56824600-56826800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr3:56824600-56826800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr3:56824600-56829000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr3:56824600-56829000	Weak transcription	Colon Smooth Muscle	Colon
36	chr3:56824600-56830200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr3:56824800-56826800	Enhancers	Monocytes-CD14+_RO01746	blood
38	chr3:56824800-56827000	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr3:56824800-56829000	Weak transcription	Fetal Lung	lung
40	chr3:56824800-56829000	Weak transcription	HMEC	breast
41	chr3:56824800-56829800	Weak transcription	Right Ventricle	heart
42	chr3:56825000-56827000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr3:56825000-56829000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr3:56825000-56831800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr3:56825200-56826800	Enhancers	Fetal Heart	heart
46	chr3:56825200-56829200	Weak transcription	Hela-S3	cervix
47	chr3:56825200-56829400	Enhancers	Primary T killer memory cells from peripheral blood	blood
48	chr3:56825200-56832000	Weak transcription	Brain Substantia Nigra	brain
49	chr3:56825400-56829600	Weak transcription	Primary B cells from peripheral blood	blood
50	chr3:56825400-56831800	Weak transcription	NHEK	skin

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