Variant report

Variant	rs12058858
Chromosome Location	chr1:95360115-95360116
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95357972..95361717-chr1:95362316..95366848,4	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12401925	0.92[AMR][1000 genomes]
rs17112682	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17112728	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17112770	0.88[AMR][1000 genomes]
rs3789711	0.82[AMR][1000 genomes]
rs3860361	0.94[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs41497749	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs9659040	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9660177	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95329000-95385000	Weak transcription	Colonic Mucosa	Colon
2	chr1:95333200-95370000	Weak transcription	Small Intestine	intestine
3	chr1:95340200-95361200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:95343400-95361400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:95348400-95360200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr1:95348800-95360800	Weak transcription	Lung	lung
7	chr1:95349800-95364200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr1:95350000-95360800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr1:95350200-95361000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:95350200-95361000	Weak transcription	Adipose Nuclei	Adipose
11	chr1:95350200-95361000	Weak transcription	Fetal Heart	heart
12	chr1:95350200-95361400	Weak transcription	A549	lung
13	chr1:95350400-95360400	Weak transcription	Fetal Kidney	kidney
14	chr1:95350400-95360600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr1:95350400-95360600	Weak transcription	Brain Germinal Matrix	brain
16	chr1:95350400-95360800	Weak transcription	Esophagus	oesophagus
17	chr1:95350400-95361000	Weak transcription	Aorta	Aorta
18	chr1:95350400-95361000	Weak transcription	Colon Smooth Muscle	Colon
19	chr1:95350400-95361000	Weak transcription	Fetal Lung	lung
20	chr1:95350400-95361200	Weak transcription	Fetal Brain Male	brain
21	chr1:95350400-95368800	Weak transcription	Spleen	Spleen
22	chr1:95350400-95378200	Weak transcription	Brain Angular Gyrus	brain
23	chr1:95351200-95360400	Weak transcription	Brain Hippocampus Middle	brain
24	chr1:95351200-95360400	Weak transcription	Brain Substantia Nigra	brain
25	chr1:95351400-95361200	Weak transcription	Brain Anterior Caudate	brain
26	chr1:95351800-95360200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr1:95351800-95360800	Weak transcription	Stomach Smooth Muscle	stomach
28	chr1:95352000-95361200	Weak transcription	Right Ventricle	heart
29	chr1:95352400-95361200	Weak transcription	Ovary	ovary
30	chr1:95353200-95360600	Weak transcription	Fetal Brain Female	brain
31	chr1:95353400-95373600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr1:95353600-95360600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr1:95353600-95361200	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr1:95353800-95360800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr1:95353800-95363400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr1:95353800-95373600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr1:95354600-95367800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr1:95354800-95360400	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr1:95354800-95361000	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr1:95355000-95360400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr1:95355000-95375200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr1:95355200-95373000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr1:95355800-95364400	Strong transcription	Fetal Intestine Large	intestine
44	chr1:95356000-95360800	Weak transcription	NHEK	skin
45	chr1:95356000-95363400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr1:95356000-95363800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr1:95356000-95365400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr1:95356000-95370200	Strong transcription	Fetal Muscle Trunk	muscle
49	chr1:95356000-95370800	Strong transcription	Duodenum Mucosa	Duodenum
50	chr1:95356200-95361000	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links