The 2.0 version of rSNPBase

Variant report

Variant rs12401925
Chromosome Location chr1:95373243-95373244
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:95 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:95329000-95385000 Weak transcription Colonic Mucosa Colon
2 chr1:95350400-95378200 Weak transcription Brain Angular Gyrus brain
3 chr1:95353400-95373600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr1:95353800-95373600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr1:95355000-95375200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
6 chr1:95356200-95375000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
7 chr1:95357800-95390800 Weak transcription Primary hematopoietic stem cells blood
8 chr1:95360200-95373800 Weak transcription Fetal Intestine Small intestine
9 chr1:95360200-95375000 Weak transcription Psoas Muscle Psoas
10 chr1:95360400-95378400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
11 chr1:95360800-95373600 Strong transcription iPS-20b Cell Line embryonic stem cell
12 chr1:95361400-95379600 Weak transcription Esophagus oesophagus
13 chr1:95363600-95377200 Weak transcription Gastric stomach
14 chr1:95364000-95388600 Weak transcription Fetal Brain Male brain
15 chr1:95364400-95375000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
16 chr1:95364800-95384800 Weak transcription Brain Inferior Temporal Lobe brain
17 chr1:95365600-95375400 Weak transcription Brain Germinal Matrix brain
18 chr1:95367800-95375600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr1:95367800-95376200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
20 chr1:95368400-95388400 Weak transcription Fetal Intestine Large intestine
21 chr1:95368400-95390600 Weak transcription Fetal Thymus thymus
22 chr1:95368800-95373600 Weak transcription ES-I3 Cell Line embryonic stem cell
23 chr1:95368800-95374000 Genic enhancers Breast Myoepithelial Primary Cells Breast
24 chr1:95369000-95378400 Weak transcription Rectal Mucosa Donor 29 rectum
25 chr1:95369000-95388200 Weak transcription Fetal Brain Female brain
26 chr1:95369200-95373600 Weak transcription H1 Cell Line embryonic stem cell
27 chr1:95369200-95373600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
28 chr1:95369200-95373600 Weak transcription Brain Cingulate Gyrus brain
29 chr1:95369200-95373600 Weak transcription Sigmoid Colon Sigmoid Colon
30 chr1:95369200-95373800 Weak transcription H9 Cell Line embryonic stem cell
31 chr1:95369200-95376200 Weak transcription Brain Substantia Nigra brain
32 chr1:95369200-95378000 Weak transcription Rectal Mucosa Donor 31 rectum
33 chr1:95369400-95375200 Weak transcription Brain Hippocampus Middle brain
34 chr1:95369600-95373400 Weak transcription HUES48 Cell Line embryonic stem cell
35 chr1:95369600-95374800 Weak transcription A549 lung
36 chr1:95369600-95375000 Weak transcription Fetal Heart heart
37 chr1:95369600-95378000 Weak transcription Brain Anterior Caudate brain
38 chr1:95370400-95373800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
39 chr1:95370400-95373800 Weak transcription Placenta Placenta
40 chr1:95370400-95377800 Weak transcription Small Intestine intestine
41 chr1:95370800-95373400 Weak transcription NHEK skin
42 chr1:95370800-95373600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
43 chr1:95370800-95373600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
44 chr1:95370800-95373600 Weak transcription Left Ventricle heart
45 chr1:95370800-95375000 Weak transcription Right Ventricle heart
46 chr1:95370800-95375000 Weak transcription HMEC breast
47 chr1:95370800-95378000 Weak transcription Aorta Aorta
48 chr1:95371000-95373400 Weak transcription Duodenum Mucosa Duodenum
49 chr1:95371000-95373600 Weak transcription iPS-18 Cell Line embryonic stem cell
50 chr1:95371000-95373600 Weak transcription HepG2 liver

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Last update: Aug 31, 2015