Variant report

Variant	rs9659040
Chromosome Location	chr1:95371329-95371330
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12058858	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12401925	0.92[AMR][1000 genomes]
rs17112682	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17112728	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17112770	0.88[AMR][1000 genomes]
rs3789711	0.82[AMR][1000 genomes]
rs3860361	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9660177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95329000-95385000	Weak transcription	Colonic Mucosa	Colon
2	chr1:95350400-95378200	Weak transcription	Brain Angular Gyrus	brain
3	chr1:95353400-95373600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:95353800-95373600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:95355000-95375200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:95355200-95373000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:95356200-95375000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:95356800-95371400	Strong transcription	Liver	Liver
9	chr1:95357800-95390800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr1:95360200-95373800	Weak transcription	Fetal Intestine Small	intestine
11	chr1:95360200-95375000	Weak transcription	Psoas Muscle	Psoas
12	chr1:95360400-95378400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr1:95360800-95373600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr1:95361400-95379600	Weak transcription	Esophagus	oesophagus
15	chr1:95363400-95372400	Genic enhancers	HSMM	muscle
16	chr1:95363600-95377200	Weak transcription	Gastric	stomach
17	chr1:95363800-95373000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr1:95364000-95388600	Weak transcription	Fetal Brain Male	brain
19	chr1:95364400-95375000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr1:95364800-95384800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr1:95365600-95375400	Weak transcription	Brain Germinal Matrix	brain
22	chr1:95367200-95371400	Genic enhancers	NH-A	brain
23	chr1:95367800-95371400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr1:95367800-95375600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr1:95367800-95376200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr1:95368200-95372400	Weak transcription	Fetal Kidney	kidney
27	chr1:95368400-95388400	Weak transcription	Fetal Intestine Large	intestine
28	chr1:95368400-95390600	Weak transcription	Fetal Thymus	thymus
29	chr1:95368800-95371400	Genic enhancers	Cortex derived primary cultured neurospheres	brain
30	chr1:95368800-95373600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr1:95368800-95374000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr1:95369000-95371400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr1:95369000-95372600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr1:95369000-95378400	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr1:95369000-95388200	Weak transcription	Fetal Brain Female	brain
36	chr1:95369200-95371800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr1:95369200-95372200	Weak transcription	Fetal Lung	lung
38	chr1:95369200-95372400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr1:95369200-95373600	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr1:95369200-95373600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr1:95369200-95373600	Weak transcription	Brain Cingulate Gyrus	brain
42	chr1:95369200-95373600	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr1:95369200-95373800	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr1:95369200-95376200	Weak transcription	Brain Substantia Nigra	brain
45	chr1:95369200-95378000	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr1:95369400-95375200	Weak transcription	Brain Hippocampus Middle	brain
47	chr1:95369600-95372000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr1:95369600-95372400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr1:95369600-95373400	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr1:95369600-95374800	Weak transcription	A549	lung

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