Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165736907..165739814-chr1:165752106..165756074,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000224358	Chromatin interaction
ENSG00000143183	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10800161	1.00[AFR][1000 genomes]
rs10918267	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10918280	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10918282	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10918286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10918288	1.00[AFR][1000 genomes]
rs12062594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12063408	0.82[ASN][1000 genomes]
rs12064088	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12064187	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12064466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12072636	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12074976	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12077778	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12077875	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12079073	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12080238	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12082722	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12094467	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12401468	1.00[AMR][1000 genomes]
rs12566281	1.00[AFR][1000 genomes]
rs28735603	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756102	chr1:165652342-165877342	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1011720	chr1:165669589-165802516	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165743200-165753200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr1:165743200-165756600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:165750000-165754200	Weak transcription	Right Atrium	heart

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