Variant report

Variant	rs12062097
Chromosome Location	chr1:70563991-70563992
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1009127	1.00[EUR][1000 genomes]
rs11209590	0.86[AFR][1000 genomes]
rs11801993	1.00[EUR][1000 genomes]
rs12062363	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12069888	1.00[AMR][1000 genomes]
rs12070826	1.00[AMR][1000 genomes]
rs12095169	0.86[AFR][1000 genomes]
rs17131165	1.00[EUR][1000 genomes]
rs17131167	1.00[EUR][1000 genomes]
rs17131168	1.00[EUR][1000 genomes]
rs17131169	1.00[EUR][1000 genomes]
rs17131171	0.83[EUR][1000 genomes]
rs17131181	1.00[EUR][1000 genomes]
rs17131206	1.00[EUR][1000 genomes]
rs17131210	1.00[EUR][1000 genomes]
rs17131224	1.00[EUR][1000 genomes]
rs2860095	1.00[EUR][1000 genomes]
rs4649908	1.00[EUR][1000 genomes]
rs4649909	1.00[EUR][1000 genomes]
rs4650021	1.00[EUR][1000 genomes]
rs4650023	1.00[EUR][1000 genomes]
rs4650024	1.00[EUR][1000 genomes]
rs4650025	1.00[EUR][1000 genomes]
rs58471111	1.00[EUR][1000 genomes]
rs58972495	1.00[EUR][1000 genomes]
rs61128607	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531879	chr1:70386455-70644617	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv461806	chr1:70494216-70566981	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv546454	chr1:70494216-70566981	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70557000-70599600	Weak transcription	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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