Variant report

Variant	rs17131206
Chromosome Location	chr1:70572383-70572384
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1009127	1.00[EUR][1000 genomes]
rs11801993	1.00[EUR][1000 genomes]
rs11805173	1.00[AMR][1000 genomes]
rs12062097	1.00[EUR][1000 genomes]
rs17131165	1.00[EUR][1000 genomes]
rs17131167	1.00[EUR][1000 genomes]
rs17131168	1.00[EUR][1000 genomes]
rs17131169	1.00[EUR][1000 genomes]
rs17131171	0.83[EUR][1000 genomes]
rs17131181	1.00[EUR][1000 genomes]
rs17131210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17131224	1.00[EUR][1000 genomes]
rs2860095	1.00[EUR][1000 genomes]
rs4649908	1.00[EUR][1000 genomes]
rs4649909	1.00[EUR][1000 genomes]
rs4650021	1.00[EUR][1000 genomes]
rs4650023	1.00[EUR][1000 genomes]
rs4650024	1.00[EUR][1000 genomes]
rs4650025	1.00[EUR][1000 genomes]
rs58471111	1.00[EUR][1000 genomes]
rs58972495	1.00[EUR][1000 genomes]
rs61128607	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531879	chr1:70386455-70644617	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70557000-70599600	Weak transcription	Fetal Brain Female	brain
2	chr1:70570800-70572400	Weak transcription	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links