Variant report
| Variant | rs58471111 |
|---|---|
| Chromosome Location | chr1:70584476-70584477 |
| allele | A/C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr1:70584463-70584517 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| LRRC7 | TF binding region |
| ENSG00000033122 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1009127 | 1.00[EUR][1000 genomes] |
| rs11801993 | 1.00[EUR][1000 genomes] |
| rs12062097 | 1.00[EUR][1000 genomes] |
| rs17131146 | 1.00[ASN][1000 genomes] |
| rs17131165 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17131167 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17131168 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17131169 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17131171 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17131181 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17131206 | 1.00[EUR][1000 genomes] |
| rs17131210 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17131224 | 1.00[EUR][1000 genomes] |
| rs28570245 | 1.00[ASN][1000 genomes] |
| rs2860095 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4649908 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4649909 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4650021 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4650023 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4650024 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4650025 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57455508 | 1.00[ASN][1000 genomes] |
| rs58972495 | 1.00[EUR][1000 genomes] |
| rs60600482 | 1.00[ASN][1000 genomes] |
| rs61128607 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531879 | chr1:70386455-70644617 | Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:70557000-70599600 | Weak transcription | Fetal Brain Female | brain |
| 2 | chr1:70583800-70599600 | Weak transcription | Fetal Heart | heart |
