Variant report

Variant	rs12063062
Chromosome Location	chr1:223692369-223692370
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10907384	0.81[ASN][1000 genomes]
rs12046541	0.83[ASN][1000 genomes]
rs3922892	0.82[ASN][1000 genomes]
rs3935462	0.81[ASN][1000 genomes]
rs4456085	0.82[ASN][1000 genomes]
rs4559495	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4603130	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4661271	0.83[ASN][1000 genomes]
rs4661273	0.83[ASN][1000 genomes]
rs4661278	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61823509	0.83[ASN][1000 genomes]
rs61823516	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6682926	0.83[ASN][1000 genomes]
rs6685694	0.83[ASN][1000 genomes]
rs7554045	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520420	chr1:223682051-223693162	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223690200-223693000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:223691400-223699600	Weak transcription	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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