Variant report

Variant	rs61823516
Chromosome Location	chr1:223684206-223684207
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10907384	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12046541	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12063062	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3922892	0.90[ASN][1000 genomes]
rs3935462	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4456085	0.90[ASN][1000 genomes]
rs4559495	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4603130	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4661271	0.91[ASN][1000 genomes]
rs4661273	0.91[ASN][1000 genomes]
rs4661278	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61823509	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6682926	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6685694	0.91[ASN][1000 genomes]
rs7554045	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520420	chr1:223682051-223693162	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223679000-223685200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:223683200-223686800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr1:223683400-223685800	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr1:223683400-223686800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr1:223683800-223686400	Weak transcription	Primary T cells from cord blood	blood
6	chr1:223684200-223684400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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