Variant report

Variant	rs4661278
Chromosome Location	chr1:223692080-223692081
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10907384	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12046541	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12063062	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3922892	0.88[ASN][1000 genomes]
rs3935462	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4456085	0.88[ASN][1000 genomes]
rs4559495	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4603130	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4661271	0.89[ASN][1000 genomes]
rs4661273	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61823509	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61823516	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6682926	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6685694	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7554045	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520420	chr1:223682051-223693162	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223690200-223693000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:223691400-223699600	Weak transcription	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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