Variant report

Variant	rs12064766
Chromosome Location	chr1:103517530-103517531
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1012281	0.87[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10493986	1.00[CHB][hapmap]
rs10874666	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10874667	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10874669	0.87[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10874670	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10874674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164640	1.00[CHB][hapmap]
rs11164643	1.00[CHB][hapmap]
rs11164655	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11164663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11164664	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11586849	1.00[CHB][hapmap]
rs12057584	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12062184	1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12064011	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12076769	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12078741	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12084574	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12084902	1.00[CHB][hapmap]
rs12117071	1.00[CHB][hapmap]
rs12118250	1.00[CHB][hapmap]
rs12121498	1.00[CHB][hapmap]
rs12121824	1.00[CHB][hapmap]
rs12121894	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12123005	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12125432	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12126868	0.87[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12130285	1.00[CHB][hapmap]
rs12130848	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12133515	1.00[CHB][hapmap]
rs12135438	1.00[CHB][hapmap]
rs12140745	1.00[CHB][hapmap]
rs12140939	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12141988	1.00[CHB][hapmap]
rs12142333	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12145801	1.00[CHB][hapmap]
rs12145872	1.00[CHB][hapmap]
rs1337195	1.00[CHB][hapmap]
rs1577803	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17127270	1.00[CHB][hapmap]
rs2045819	1.00[CHB][hapmap]
rs2376260	1.00[CHB][hapmap]
rs2615975	0.85[ASN][1000 genomes]
rs2622858	0.85[ASN][1000 genomes]
rs3861742	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs4391683	1.00[CHB][hapmap]
rs4908287	1.00[CHB][hapmap]
rs4908288	1.00[CHB][hapmap]
rs4908290	1.00[CHB][hapmap]
rs6674315	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs74110526	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7513552	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7517160	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7520435	1.00[CHB][hapmap]
rs7537288	0.87[CEU][hapmap]
rs7543082	0.87[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522922	chr1:103305021-103764640	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv870600	chr1:103336601-103548497	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv871475	chr1:103339272-103548497	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv871078	chr1:103352451-103548497	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv870607	chr1:103362909-103528128	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv870995	chr1:103384610-103548497	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv871372	chr1:103403752-103564540	Strong transcription Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv871736	chr1:103409100-103548497	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv871657	chr1:103427381-103528128	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv462783	chr1:103438795-103548497	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv546937	chr1:103438795-103548497	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv462794	chr1:103450196-103539007	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv546938	chr1:103450196-103539007	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv871286	chr1:103455217-103528128	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv830893	chr1:103458498-103635579	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv871365	chr1:103476179-103548497	Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103449200-103545200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:103516400-103518400	Strong transcription	Cortex derived primary cultured neurospheres	brain
3	chr1:103516400-103521400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:103516600-103517600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:103517000-103518000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:103517200-103518000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:103517400-103557200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links