Variant report

Variant	rs7520435
Chromosome Location	chr1:103320183-103320184
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFYB	chr1:103319761-103320189	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000230864	TF binding region

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1012281	1.00[CHB][hapmap]
rs10874669	1.00[CHB][hapmap]
rs11164619	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164621	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164623	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164640	1.00[CHB][hapmap]
rs11164643	1.00[CHB][hapmap]
rs11485379	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12062184	1.00[CHB][hapmap]
rs12064766	1.00[CHB][hapmap]
rs12084902	1.00[CHB][hapmap]
rs12116546	0.86[ASN][1000 genomes]
rs12117071	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12118250	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs12118259	0.80[EUR][1000 genomes]
rs12120613	0.81[EUR][1000 genomes]
rs12121251	0.80[EUR][1000 genomes]
rs12121498	1.00[CHB][hapmap]
rs12121824	1.00[CHB][hapmap]
rs12121894	1.00[CHB][hapmap]
rs12124233	0.80[EUR][1000 genomes]
rs12125550	0.80[EUR][1000 genomes]
rs12126530	1.00[ASN][1000 genomes]
rs12126635	0.80[EUR][1000 genomes]
rs12126868	1.00[CHB][hapmap]
rs12127710	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12128743	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12130285	1.00[CHB][hapmap]
rs12133515	1.00[CHB][hapmap]
rs12134175	0.80[EUR][1000 genomes]
rs12135438	1.00[CHB][hapmap]
rs12136421	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12140745	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12141988	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs12145801	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs12145872	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs17127270	1.00[CHB][hapmap]
rs1963969	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2045819	1.00[CHB][hapmap]
rs2061707	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2376260	1.00[CHB][hapmap]
rs28648038	0.80[EUR][1000 genomes]
rs2889331	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3861742	1.00[CHB][hapmap]
rs6703720	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73000234	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7543082	1.00[CHB][hapmap]
rs992100	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830882	chr1:103192683-103355802	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv522922	chr1:103305021-103764640	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3413112	chr1:103318389-103320937	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103317800-103321800	Weak transcription	NHDF-Ad	bronchial
2	chr1:103318200-103320800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:103318400-103324000	Weak transcription	Osteobl	bone
4	chr1:103318400-103324600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:103319200-103320600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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