Variant report
| Variant | rs11485379 |
|---|---|
| Chromosome Location | chr1:103310822-103310823 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs11164619 | 0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11164621 | 1.00[ASN][1000 genomes] |
| rs11164623 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12116546 | 0.86[ASN][1000 genomes] |
| rs12117071 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12118250 | 0.81[EUR][1000 genomes] |
| rs12118259 | 0.81[EUR][1000 genomes] |
| rs12120613 | 0.83[EUR][1000 genomes] |
| rs12121251 | 0.81[EUR][1000 genomes] |
| rs12124233 | 0.81[EUR][1000 genomes] |
| rs12125550 | 0.81[EUR][1000 genomes] |
| rs12126530 | 1.00[ASN][1000 genomes] |
| rs12126635 | 0.81[EUR][1000 genomes] |
| rs12127710 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12128743 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12134175 | 0.81[EUR][1000 genomes] |
| rs12136421 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12140745 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12141988 | 0.81[EUR][1000 genomes] |
| rs12145801 | 0.81[EUR][1000 genomes] |
| rs12145872 | 0.81[EUR][1000 genomes] |
| rs1963969 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2061707 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28648038 | 0.81[EUR][1000 genomes] |
| rs2889331 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6703720 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73000234 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7520435 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs992100 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830882 | chr1:103192683-103355802 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv522922 | chr1:103305021-103764640 | Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:103310800-103311200 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
