Variant report

Variant	rs11164623
Chromosome Location	chr1:103336473-103336474
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1012281	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10874669	1.00[CHB][hapmap]
rs11164619	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164621	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes]
rs11164643	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11485379	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12062184	1.00[CHB][hapmap]
rs12064766	1.00[CHB][hapmap]
rs12073619	0.83[AFR][1000 genomes]
rs12079176	0.89[AFR][1000 genomes]
rs12084902	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs12116546	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12117071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12118250	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs12119468	0.87[EUR][1000 genomes]
rs12120318	0.87[EUR][1000 genomes]
rs12120961	0.87[EUR][1000 genomes]
rs12121498	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes]
rs12121824	1.00[CHB][hapmap]
rs12121894	1.00[CHB][hapmap]
rs12124674	0.87[EUR][1000 genomes]
rs12125551	0.87[EUR][1000 genomes]
rs12126530	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12126868	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs12127007	0.87[EUR][1000 genomes]
rs12127710	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12128743	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12130285	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs12133116	0.87[EUR][1000 genomes]
rs12133437	0.82[EUR][1000 genomes]
rs12133515	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs12135438	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs12136421	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12140704	0.82[EUR][1000 genomes]
rs12140745	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12141988	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs12142137	0.87[EUR][1000 genomes]
rs12145801	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs12145872	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs17127270	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1963969	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2045819	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2061706	0.91[EUR][1000 genomes]
rs2061707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2376260	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs2889331	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3861742	1.00[CHB][hapmap]
rs6703720	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72983785	0.81[EUR][1000 genomes]
rs73000234	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7513552	1.00[CHB][hapmap]
rs7520435	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7543082	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs7553464	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830882	chr1:103192683-103355802	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv522922	chr1:103305021-103764640	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv546928	chr1:103331349-103371652	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103334000-103349800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:103335400-103350000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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