Variant report

Variant	rs2061706
Chromosome Location	chr1:103333563-103333564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1012281	0.80[CEU][hapmap]
rs11164619	0.92[EUR][1000 genomes]
rs11164621	0.89[EUR][1000 genomes]
rs11164623	0.91[EUR][1000 genomes]
rs11164640	1.00[CEU][hapmap]
rs12117071	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12118250	0.83[CEU][hapmap]
rs12119468	0.81[EUR][1000 genomes]
rs12120318	0.81[EUR][1000 genomes]
rs12120961	0.81[EUR][1000 genomes]
rs12121498	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12124674	0.81[EUR][1000 genomes]
rs12125551	0.81[EUR][1000 genomes]
rs12126530	0.86[EUR][1000 genomes]
rs12126868	0.80[CEU][hapmap]
rs12127007	0.81[EUR][1000 genomes]
rs12127710	0.91[EUR][1000 genomes]
rs12128743	0.92[EUR][1000 genomes]
rs12130285	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12131248	1.00[AFR][1000 genomes]
rs12133116	0.81[EUR][1000 genomes]
rs12133515	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12135438	1.00[CEU][hapmap]
rs12136421	0.92[EUR][1000 genomes]
rs12140745	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12141988	0.83[CEU][hapmap]
rs12142137	0.81[EUR][1000 genomes]
rs12144199	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12145801	0.83[CEU][hapmap]
rs12145872	0.83[CEU][hapmap]
rs2061707	0.91[EUR][1000 genomes]
rs2376260	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2889331	0.91[EUR][1000 genomes]
rs6703720	0.92[EUR][1000 genomes]
rs73000234	0.91[EUR][1000 genomes]
rs7543082	0.80[CEU][hapmap]
rs7553464	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830882	chr1:103192683-103355802	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv522922	chr1:103305021-103764640	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv546928	chr1:103331349-103371652	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103324800-103334200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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