Variant report

Variant	rs73000234
Chromosome Location	chr1:103328298-103328299
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:103322613..103325550-chr1:103327919..103330236,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11164619	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164623	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164640	0.81[EUR][1000 genomes]
rs11485379	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12073619	0.82[AFR][1000 genomes]
rs12079176	0.88[AFR][1000 genomes]
rs12116546	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12117071	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12119468	0.87[EUR][1000 genomes]
rs12120318	0.87[EUR][1000 genomes]
rs12120961	0.87[EUR][1000 genomes]
rs12121498	0.87[EUR][1000 genomes]
rs12124674	0.87[EUR][1000 genomes]
rs12125551	0.87[EUR][1000 genomes]
rs12126530	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12127007	0.87[EUR][1000 genomes]
rs12127710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12128743	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12130285	0.87[EUR][1000 genomes]
rs12133116	0.87[EUR][1000 genomes]
rs12133437	0.82[EUR][1000 genomes]
rs12133515	0.87[EUR][1000 genomes]
rs12135438	0.86[EUR][1000 genomes]
rs12136421	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12140704	0.82[EUR][1000 genomes]
rs12140745	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12142137	0.87[EUR][1000 genomes]
rs1963969	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2061706	0.91[EUR][1000 genomes]
rs2061707	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2376260	0.87[EUR][1000 genomes]
rs2889331	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6703720	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72983785	0.81[EUR][1000 genomes]
rs7520435	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7553464	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830882	chr1:103192683-103355802	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv522922	chr1:103305021-103764640	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103324800-103334200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:103327800-103328600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:103328200-103328600	Enhancers	HUES64 Cell Line	embryonic stem cell

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