Variant report

No.	Distal block	Cell Line	Cell type
1	chr1:159940364..159943958-chr1:159945602..159948326,3	K562	blood:
2	chr1:159940364..159943958-chr1:159945441..159948326,4	K562	blood:
3	chr1:159946629..159948421-chr1:159952225..159953847,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KCNJ9-2	chr1:159946069-159950343	NONHSAT007031

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12144158	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12732517	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12740563	0.87[ASN][1000 genomes]
rs12759403	0.87[ASN][1000 genomes]
rs1344028	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16842817	1.00[CHB][hapmap]
rs2789426	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2840590	1.00[ASN][1000 genomes]
rs34128710	0.87[ASN][1000 genomes]
rs34401812	0.87[ASN][1000 genomes]
rs34702040	0.87[ASN][1000 genomes]
rs35541552	0.87[ASN][1000 genomes]
rs35622571	1.00[ASN][1000 genomes]
rs35769623	0.87[ASN][1000 genomes]
rs41265747	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57616807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58872353	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59673346	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60537025	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61734538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71628159	0.87[ASN][1000 genomes]
rs71628160	1.00[ASN][1000 genomes]
rs71628162	1.00[ASN][1000 genomes]
rs71628163	1.00[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159932000-159949800	Weak transcription	Esophagus	oesophagus
2	chr1:159933200-159947200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:159933400-159950600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:159937400-159947200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:159940200-159947400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr1:159941600-159957800	Weak transcription	Right Atrium	heart
7	chr1:159942000-159951200	Weak transcription	Gastric	stomach
8	chr1:159942000-159951600	Weak transcription	Pancreas	Pancrea
9	chr1:159942200-159947200	Weak transcription	Duodenum Mucosa	Duodenum
10	chr1:159942200-159950000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr1:159942200-159959400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr1:159943200-159947400	Weak transcription	Fetal Intestine Small	intestine
13	chr1:159943200-159951200	Weak transcription	Colonic Mucosa	Colon
14	chr1:159944600-159947200	Weak transcription	Fetal Stomach	stomach
15	chr1:159945800-159951200	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr1:159946800-159952200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:159946800-159955200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr1:159947000-159947600	Strong transcription	Stomach Mucosa	stomach
19	chr1:159947000-159953800	Strong transcription	NHEK	skin

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