Variant report

Variant	rs57616807
Chromosome Location	chr1:159943452-159943453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12065741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12732517	0.89[ASN][1000 genomes]
rs2840590	0.89[ASN][1000 genomes]
rs35622571	0.89[ASN][1000 genomes]
rs41265747	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58872353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59653326	0.94[AFR][1000 genomes]
rs59673346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60537025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61734538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71628160	0.89[ASN][1000 genomes]
rs71628162	0.89[ASN][1000 genomes]
rs71628163	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv946452	chr1:159943428-159944282	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159932000-159949800	Weak transcription	Esophagus	oesophagus
2	chr1:159933200-159947200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:159933400-159950600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:159937400-159947200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:159937600-159944000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:159939000-159945200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:159940200-159947400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr1:159941000-159944600	Strong transcription	NHEK	skin
9	chr1:159941600-159957800	Weak transcription	Right Atrium	heart
10	chr1:159942000-159951200	Weak transcription	Gastric	stomach
11	chr1:159942000-159951600	Weak transcription	Pancreas	Pancrea
12	chr1:159942200-159947200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr1:159942200-159950000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr1:159942200-159959400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr1:159943200-159947400	Weak transcription	Fetal Intestine Small	intestine
16	chr1:159943200-159951200	Weak transcription	Colonic Mucosa	Colon
17	chr1:159943400-159947000	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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