Variant report

Variant	rs59653326
Chromosome Location	chr1:159936928-159936929
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs57616807	0.94[AFR][1000 genomes]
rs58872353	0.94[AFR][1000 genomes]
rs59673346	0.94[AFR][1000 genomes]
rs60537025	0.94[AFR][1000 genomes]
rs61734538	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872489	chr1:159844819-159940000	Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv548055	chr1:159918418-159940000	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159928000-159941800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:159932000-159949800	Weak transcription	Esophagus	oesophagus
3	chr1:159932400-159939600	Weak transcription	Colonic Mucosa	Colon
4	chr1:159932600-159938800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr1:159932600-159940800	Weak transcription	Gastric	stomach
6	chr1:159932800-159940800	Weak transcription	Fetal Heart	heart
7	chr1:159933200-159947200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:159933400-159939200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr1:159933400-159950600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:159934400-159938000	Weak transcription	Stomach Mucosa	stomach
11	chr1:159934800-159938200	Weak transcription	Fetal Intestine Large	intestine
12	chr1:159934800-159939000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr1:159935000-159937600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:159935200-159938200	Weak transcription	Fetal Intestine Small	intestine
15	chr1:159935200-159940600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr1:159935400-159939000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:159935400-159941000	Weak transcription	NHEK	skin
18	chr1:159936000-159937400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links