Variant report

Variant	rs12067550
Chromosome Location	chr1:103287481-103287482
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11164595	1.00[AMR][1000 genomes]
rs11164598	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12060463	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12060507	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12065298	1.00[AMR][1000 genomes]
rs12076842	1.00[AMR][1000 genomes]
rs12091479	1.00[AMR][1000 genomes]
rs12096430	1.00[AMR][1000 genomes]
rs12097587	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12098193	1.00[AMR][1000 genomes]
rs17126899	1.00[AMR][1000 genomes]
rs2198087	1.00[AMR][1000 genomes]
rs3850457	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs512945	1.00[AMR][1000 genomes]
rs574454	1.00[AMR][1000 genomes]
rs672715	1.00[AMR][1000 genomes]
rs9433923	1.00[AMR][1000 genomes]
rs9919152	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9919205	1.00[AMR][1000 genomes]
rs9919324	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830882	chr1:103192683-103355802	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103286800-103288000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr1:103287200-103287800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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