Variant report
| Variant | rs9919205 |
|---|---|
| Chromosome Location | chr1:103298856-103298857 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11164595 | 1.00[AMR][1000 genomes] |
| rs11164598 | 1.00[AMR][1000 genomes] |
| rs12060463 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12060507 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12064207 | 1.00[AMR][1000 genomes] |
| rs12065298 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12067550 | 1.00[AMR][1000 genomes] |
| rs12076842 | 1.00[AMR][1000 genomes] |
| rs12091479 | 1.00[AMR][1000 genomes] |
| rs12096430 | 1.00[AMR][1000 genomes] |
| rs12097587 | 1.00[AMR][1000 genomes] |
| rs12098193 | 1.00[AMR][1000 genomes] |
| rs17126899 | 1.00[AMR][1000 genomes] |
| rs2198087 | 1.00[AMR][1000 genomes] |
| rs3850457 | 1.00[AMR][1000 genomes] |
| rs512945 | 1.00[AMR][1000 genomes] |
| rs574454 | 1.00[AMR][1000 genomes] |
| rs672715 | 1.00[AMR][1000 genomes] |
| rs9433923 | 1.00[AMR][1000 genomes] |
| rs9919152 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9919324 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830882 | chr1:103192683-103355802 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:103293000-103299200 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
