Variant report

Variant	rs12076842
Chromosome Location	chr1:103265535-103265536
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11164595	1.00[AMR][1000 genomes]
rs11164598	1.00[AMR][1000 genomes]
rs12060463	1.00[AMR][1000 genomes]
rs12060507	1.00[AMR][1000 genomes]
rs12065298	1.00[AMR][1000 genomes]
rs12067550	1.00[AMR][1000 genomes]
rs12091479	1.00[AMR][1000 genomes]
rs12096430	1.00[AMR][1000 genomes]
rs12097587	1.00[AMR][1000 genomes]
rs12098193	1.00[AMR][1000 genomes]
rs17126899	1.00[AMR][1000 genomes]
rs2198087	1.00[AMR][1000 genomes]
rs3850457	1.00[AMR][1000 genomes]
rs512945	1.00[AMR][1000 genomes]
rs574454	1.00[AMR][1000 genomes]
rs672715	1.00[AMR][1000 genomes]
rs9433923	1.00[AMR][1000 genomes]
rs9919152	1.00[AMR][1000 genomes]
rs9919205	1.00[AMR][1000 genomes]
rs9919324	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462705	chr1:103123803-103267759	Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv546923	chr1:103123803-103267759	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv870987	chr1:103155901-103267759	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv546925	chr1:103176592-103267759	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv546926	chr1:103183066-103267759	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv830882	chr1:103192683-103355802	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv546927	chr1:103199589-103267759	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103264800-103265800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:103265000-103265600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr1:103265400-103266200	Enhancers	Brain Germinal Matrix	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links