Variant report

Variant	rs12068899
Chromosome Location	chr1:150016183-150016184
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000184260	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000014914	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000136631	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11205325	0.93[AFR][1000 genomes]
rs11205328	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12082615	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12090508	0.83[AMR][1000 genomes]
rs6677707	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6687257	0.85[AFR][1000 genomes]
rs7517537	0.83[AMR][1000 genomes]
rs7526867	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7530672	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9727702	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831537	chr1:149833357-150064655	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	431 gene(s)	inside rSNPs	diseases
2	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
3	nsv947321	chr1:150007387-150030042	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:149985600-150022000	Weak transcription	Brain Substantia Nigra	brain
2	chr1:149996600-150037000	Weak transcription	Left Ventricle	heart
3	chr1:150003800-150022400	Weak transcription	Fetal Intestine Small	intestine
4	chr1:150006600-150022400	Weak transcription	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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