Variant report

Variant	rs7517537
Chromosome Location	chr1:150114083-150114084
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:150114030..150119212-chr1:150119559..150123008,11	MCF-7	breast:
2	chr1:150112702..150115952-chr1:150117534..150119324,3	K562	blood:
3	chr1:150108740..150112627-chr1:150112979..150115926,3	K562	blood:
4	chr1:150108071..150110117-chr1:150112375..150114316,2	MCF-7	breast:
5	chr1:150113566..150115419-chr19:3361934..3363768,2	MCF-7	breast:
6	chr1:150043719..150046734-chr1:150113127..150116158,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000023902	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10788868	1.00[MEX][hapmap]
rs11205325	0.89[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap]
rs11205327	1.00[MEX][hapmap]
rs11205328	0.89[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.83[AMR][1000 genomes]
rs12058524	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs12068899	0.83[AMR][1000 genomes]
rs12082615	0.83[AMR][1000 genomes]
rs12090508	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6677707	0.83[AMR][1000 genomes]
rs6681679	0.88[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6687257	1.00[MEX][hapmap];0.95[MKK][hapmap]
rs7526867	0.83[AMR][1000 genomes]
rs7530672	0.83[AMR][1000 genomes]
rs7532297	0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9727702	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9887866	1.00[MEX][hapmap];0.84[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Uric acid levels	21294900	GWAS catalog

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150040400-150121400	Weak transcription	Pancreas	Pancrea
2	chr1:150041000-150114400	Weak transcription	Right Ventricle	heart
3	chr1:150052000-150116800	Weak transcription	Spleen	Spleen
4	chr1:150055000-150120800	Weak transcription	Aorta	Aorta
5	chr1:150061000-150116800	Weak transcription	Ovary	ovary
6	chr1:150067400-150121200	Weak transcription	Colonic Mucosa	Colon
7	chr1:150069000-150121000	Weak transcription	NHLF	lung
8	chr1:150071000-150121000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr1:150071200-150120600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr1:150072400-150121000	Weak transcription	Brain Angular Gyrus	brain
11	chr1:150079200-150121000	Weak transcription	Thymus	Thymus
12	chr1:150083200-150116400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr1:150083600-150120800	Weak transcription	Brain Hippocampus Middle	brain
14	chr1:150085400-150116400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr1:150085400-150119000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr1:150085400-150120800	Weak transcription	NH-A	brain
17	chr1:150085400-150121200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr1:150085400-150121200	Weak transcription	Psoas Muscle	Psoas
19	chr1:150085600-150121200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr1:150085800-150121000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr1:150086800-150116400	Weak transcription	Left Ventricle	heart
22	chr1:150087000-150116400	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr1:150087000-150118400	Weak transcription	Fetal Intestine Large	intestine
24	chr1:150087000-150121200	Weak transcription	Esophagus	oesophagus
25	chr1:150087000-150121200	Weak transcription	Placenta	Placenta
26	chr1:150087400-150116800	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr1:150087800-150118600	Weak transcription	Dnd41	blood
28	chr1:150087800-150120800	Weak transcription	Brain Anterior Caudate	brain
29	chr1:150087800-150121000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr1:150088000-150120800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr1:150088000-150120800	Weak transcription	Fetal Muscle Trunk	muscle
32	chr1:150091000-150116800	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr1:150091200-150116600	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr1:150091200-150120400	Weak transcription	Colon Smooth Muscle	Colon
35	chr1:150091400-150119200	Weak transcription	Brain Germinal Matrix	brain
36	chr1:150091400-150121000	Weak transcription	Duodenum Mucosa	Duodenum
37	chr1:150091600-150116600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr1:150091800-150116800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr1:150091800-150121000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr1:150094200-150121200	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr1:150094800-150116600	Weak transcription	Primary T cells from cord blood	blood
42	chr1:150095000-150120800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr1:150095400-150116800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr1:150095800-150115600	Weak transcription	Liver	Liver
45	chr1:150096200-150120200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr1:150099400-150121200	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr1:150099800-150114200	Weak transcription	HSMM	muscle
48	chr1:150099800-150116200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr1:150099800-150116600	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr1:150100000-150116400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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