Variant report

Variant	rs7526867
Chromosome Location	chr1:150100827-150100828
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:150100820..150102891-chr1:150115816..150118454,2	MCF-7	breast:
2	chr1:150038374..150041069-chr1:150098718..150101178,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136631	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11205325	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs11205328	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12068899	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12082615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12090508	0.83[AMR][1000 genomes]
rs6677707	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6687257	0.86[YRI][hapmap];0.87[AFR][1000 genomes]
rs7517537	0.83[AMR][1000 genomes]
rs7530672	0.87[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9727702	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150040400-150121400	Weak transcription	Pancreas	Pancrea
2	chr1:150041000-150114400	Weak transcription	Right Ventricle	heart
3	chr1:150052000-150116800	Weak transcription	Spleen	Spleen
4	chr1:150055000-150120800	Weak transcription	Aorta	Aorta
5	chr1:150055200-150104800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr1:150061000-150116800	Weak transcription	Ovary	ovary
7	chr1:150067000-150113200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr1:150067200-150101200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:150067400-150121200	Weak transcription	Colonic Mucosa	Colon
10	chr1:150069000-150113800	Weak transcription	Fetal Kidney	kidney
11	chr1:150069000-150121000	Weak transcription	NHLF	lung
12	chr1:150071000-150121000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr1:150071200-150120600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr1:150072400-150121000	Weak transcription	Brain Angular Gyrus	brain
15	chr1:150077200-150113000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr1:150077400-150112800	Weak transcription	Fetal Heart	heart
17	chr1:150079200-150121000	Weak transcription	Thymus	Thymus
18	chr1:150083200-150116400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr1:150083600-150120800	Weak transcription	Brain Hippocampus Middle	brain
20	chr1:150084000-150110600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr1:150085400-150116400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr1:150085400-150119000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr1:150085400-150120800	Weak transcription	NH-A	brain
24	chr1:150085400-150121200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr1:150085400-150121200	Weak transcription	Psoas Muscle	Psoas
26	chr1:150085600-150121200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr1:150085800-150121000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr1:150086800-150116400	Weak transcription	Left Ventricle	heart
29	chr1:150087000-150107600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr1:150087000-150116400	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr1:150087000-150118400	Weak transcription	Fetal Intestine Large	intestine
32	chr1:150087000-150121200	Weak transcription	Esophagus	oesophagus
33	chr1:150087000-150121200	Weak transcription	Placenta	Placenta
34	chr1:150087200-150107400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr1:150087400-150116800	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr1:150087800-150102400	Weak transcription	Adipose Nuclei	Adipose
37	chr1:150087800-150110200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr1:150087800-150113800	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr1:150087800-150118600	Weak transcription	Dnd41	blood
40	chr1:150087800-150120800	Weak transcription	Brain Anterior Caudate	brain
41	chr1:150087800-150121000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr1:150088000-150111400	Weak transcription	GM12878-XiMat	blood
43	chr1:150088000-150113800	Weak transcription	HSMMtube	muscle
44	chr1:150088000-150120800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr1:150088000-150120800	Weak transcription	Fetal Muscle Trunk	muscle
46	chr1:150088600-150107600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr1:150088800-150111000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr1:150091000-150116800	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr1:150091200-150116600	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr1:150091200-150120400	Weak transcription	Colon Smooth Muscle	Colon

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