Variant report

Variant	rs1207273
Chromosome Location	chr11:70716035-70716036
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17161143	0.86[YRI][hapmap]
rs2921326	1.00[CHB][hapmap];0.94[CHD][hapmap];0.90[JPT][hapmap];0.85[MKK][hapmap];0.86[ASN][1000 genomes]
rs3017478	0.82[ASN][1000 genomes]
rs517114	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1207273	FOLR3	cis	cerebellum	SCAN
rs1207273	TMEM134	cis	parietal	SCAN
rs1207273	C11orf80	cis	parietal	SCAN
rs1207273	RCE1	cis	parietal	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70670000-70731800	Weak transcription	Gastric	stomach
2	chr11:70701800-70722800	Weak transcription	Pancreas	Pancrea
3	chr11:70702200-70724000	Weak transcription	Liver	Liver
4	chr11:70706600-70724400	Weak transcription	HepG2	liver
5	chr11:70707400-70735200	Weak transcription	Fetal Intestine Large	intestine
6	chr11:70708000-70722800	Weak transcription	Spleen	Spleen
7	chr11:70708600-70717600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr11:70708600-70728200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:70709200-70718000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:70710600-70735400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:70712400-70716600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:70714400-70717600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:70714800-70717600	Strong transcription	Fetal Intestine Small	intestine
14	chr11:70715600-70717200	Weak transcription	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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