Variant report

Variant	rs3017478
Chromosome Location	chr11:70698034-70698035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10751308	0.85[EUR][1000 genomes]
rs11237722	0.95[CEU][hapmap];0.82[TSI][hapmap];0.86[EUR][1000 genomes]
rs1207273	0.82[ASN][1000 genomes]
rs12806832	0.82[CEU][hapmap]
rs17161143	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs2921326	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];0.85[JPT][hapmap];0.84[LWK][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.93[YRI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3019837	0.87[EUR][1000 genomes]
rs517114	0.86[CEU][hapmap];0.90[CHB][hapmap];0.87[EUR][1000 genomes]
rs6592814	0.88[EUR][1000 genomes]
rs9734771	0.81[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3017478	TMEM134	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70670000-70731800	Weak transcription	Gastric	stomach
2	chr11:70681800-70701400	Weak transcription	Liver	Liver
3	chr11:70695200-70699000	Weak transcription	Fetal Brain Male	brain
4	chr11:70696800-70700600	Weak transcription	Pancreas	Pancrea
5	chr11:70696800-70706000	Weak transcription	HepG2	liver
6	chr11:70697400-70698400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:70697800-70698200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:70697800-70700600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:70698000-70698600	ZNF genes & repeats	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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