Variant report

Variant	rs11237722
Chromosome Location	chr11:70704905-70704906
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10751308	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793347	0.90[AFR][1000 genomes]
rs11237649	0.90[AFR][1000 genomes]
rs12806832	0.87[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2921326	0.91[CEU][hapmap];0.85[TSI][hapmap];0.86[EUR][1000 genomes]
rs2921331	0.81[JPT][hapmap]
rs3017478	0.86[EUR][1000 genomes]
rs3017479	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3019837	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3019840	0.90[AFR][1000 genomes]
rs517114	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs56308736	0.90[AFR][1000 genomes]
rs6592814	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7929452	0.90[AFR][1000 genomes]
rs7932689	0.90[AFR][1000 genomes]
rs9326493	0.90[AFR][1000 genomes]
rs9734771	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11237722	TMEM134	cis	parietal	SCAN
rs11237722	LRP5	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70670000-70731800	Weak transcription	Gastric	stomach
2	chr11:70696800-70706000	Weak transcription	HepG2	liver
3	chr11:70698600-70709000	Weak transcription	Fetal Intestine Small	intestine
4	chr11:70699800-70709800	Weak transcription	Fetal Brain Male	brain
5	chr11:70700000-70708000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:70701000-70707200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:70701000-70712200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:70701800-70722800	Weak transcription	Pancreas	Pancrea
9	chr11:70702200-70724000	Weak transcription	Liver	Liver
10	chr11:70703400-70705000	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr11:70704200-70705200	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr11:70704600-70707800	Weak transcription	Fetal Muscle Leg	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links