Variant report

Variant	rs3019840
Chromosome Location	chr11:70682520-70682521
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10751308	0.90[AFR][1000 genomes]
rs10793347	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11237599	0.87[AMR][1000 genomes]
rs11237600	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11237649	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11237722	0.90[AFR][1000 genomes]
rs3017477	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3019837	0.81[AFR][1000 genomes]
rs56308736	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592814	0.90[AFR][1000 genomes]
rs7929452	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932689	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9326493	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9734771	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70665400-70684400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:70670000-70731800	Weak transcription	Gastric	stomach
3	chr11:70673000-70688800	Weak transcription	Pancreas	Pancrea
4	chr11:70674000-70683800	Weak transcription	Fetal Intestine Large	intestine
5	chr11:70677400-70683200	Strong transcription	Fetal Intestine Small	intestine
6	chr11:70678400-70686200	Strong transcription	HepG2	liver
7	chr11:70681400-70683800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:70681800-70683400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:70681800-70701400	Weak transcription	Liver	Liver
10	chr11:70682200-70683000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
11	chr11:70682200-70685200	ZNF genes & repeats	Fetal Stomach	stomach
12	chr11:70682400-70682600	Enhancers	HSMMtube	muscle
13	chr11:70682400-70689800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:70682400-70690400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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