Variant report

Variant	rs9734771
Chromosome Location	chr11:70689978-70689979
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10751308	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10793347	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11237649	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11237722	1.00[ASW][hapmap];0.95[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.92[TSI][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12806832	0.82[CEU][hapmap];0.90[JPT][hapmap]
rs2921326	0.86[CEU][hapmap]
rs2921331	0.90[JPT][hapmap]
rs3017477	0.83[ASN][1000 genomes]
rs3017478	0.81[EUR][1000 genomes]
rs3019837	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs3019840	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs56308736	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6592814	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7929452	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7932689	0.90[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs9326493	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9734771	TMEM134	cis	parietal	SCAN
rs9734771	RHOD	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70670000-70731800	Weak transcription	Gastric	stomach
2	chr11:70681800-70701400	Weak transcription	Liver	Liver
3	chr11:70682400-70690400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:70684800-70697000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:70685200-70691600	Weak transcription	Fetal Brain Female	brain
6	chr11:70686000-70690200	Strong transcription	Fetal Intestine Small	intestine
7	chr11:70686400-70690800	Weak transcription	Right Atrium	heart
8	chr11:70688200-70696000	Weak transcription	HepG2	liver
9	chr11:70688800-70690400	Strong transcription	Pancreas	Pancrea
10	chr11:70689200-70692000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:70689800-70690000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr11:70689800-70690200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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