Variant report

Variant	rs10751308
Chromosome Location	chr11:70712156-70712157
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10793347	0.90[AFR][1000 genomes]
rs11237649	0.90[AFR][1000 genomes]
rs11237722	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12806832	0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2921326	0.91[CEU][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes]
rs2921331	0.81[JPT][hapmap]
rs3017478	0.85[EUR][1000 genomes]
rs3017479	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3019837	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3019840	0.90[AFR][1000 genomes]
rs517114	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs56308736	0.90[AFR][1000 genomes]
rs6592814	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7929452	0.90[AFR][1000 genomes]
rs7932689	0.90[AFR][1000 genomes]
rs9326493	0.90[AFR][1000 genomes]
rs9734771	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10751308	TMEM134	cis	parietal	SCAN
rs10751308	LRP5	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70670000-70731800	Weak transcription	Gastric	stomach
2	chr11:70701000-70712200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:70701800-70722800	Weak transcription	Pancreas	Pancrea
4	chr11:70702200-70724000	Weak transcription	Liver	Liver
5	chr11:70706600-70724400	Weak transcription	HepG2	liver
6	chr11:70707400-70735200	Weak transcription	Fetal Intestine Large	intestine
7	chr11:70708000-70722800	Weak transcription	Spleen	Spleen
8	chr11:70708600-70717600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:70708600-70728200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:70709200-70718000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:70710400-70714800	Weak transcription	Fetal Intestine Small	intestine
12	chr11:70710600-70713600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:70710600-70735400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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