Variant report

Variant	rs517114
Chromosome Location	chr11:70718843-70718844
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10751308	0.80[EUR][1000 genomes]
rs11237722	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs1207273	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2921326	0.91[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3017478	0.87[EUR][1000 genomes]
rs3019837	0.81[EUR][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70670000-70731800	Weak transcription	Gastric	stomach
2	chr11:70701800-70722800	Weak transcription	Pancreas	Pancrea
3	chr11:70702200-70724000	Weak transcription	Liver	Liver
4	chr11:70706600-70724400	Weak transcription	HepG2	liver
5	chr11:70707400-70735200	Weak transcription	Fetal Intestine Large	intestine
6	chr11:70708000-70722800	Weak transcription	Spleen	Spleen
7	chr11:70708600-70728200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:70710600-70735400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:70717400-70719000	Enhancers	Rectal Smooth Muscle	rectum
10	chr11:70717400-70719200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr11:70717400-70720000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:70717600-70719400	Enhancers	Colon Smooth Muscle	Colon
13	chr11:70717600-70720200	Enhancers	H1 Cell Line	embryonic stem cell
14	chr11:70717600-70720200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:70717800-70719000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr11:70717800-70719200	Flanking Active TSS	Stomach Smooth Muscle	stomach
17	chr11:70718000-70719800	Enhancers	Brain Germinal Matrix	brain
18	chr11:70718000-70720000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:70718000-70720200	Enhancers	Fetal Muscle Leg	muscle
20	chr11:70718000-70720600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:70718200-70719000	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr11:70718200-70720200	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr11:70718200-70722800	Weak transcription	Fetal Lung	lung
24	chr11:70718400-70720200	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr11:70718400-70720200	Enhancers	Fetal Brain Male	brain
26	chr11:70718600-70719800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr11:70718600-70720000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
28	chr11:70718600-70720200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:70718800-70719200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr11:70718800-70719200	Weak transcription	Brain Cingulate Gyrus	brain
31	chr11:70718800-70719200	Bivalent Enhancer	Fetal Stomach	stomach
32	chr11:70718800-70719400	Strong transcription	Fetal Intestine Small	intestine
33	chr11:70718800-70719600	Enhancers	Fetal Brain Female	brain
34	chr11:70718800-70719800	Enhancers	HUES6 Cell Line	embryonic stem cell

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