Variant report

Variant	rs9326493
Chromosome Location	chr11:70689595-70689596
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10751308	0.90[AFR][1000 genomes]
rs10793347	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11237649	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11237722	1.00[GIH][hapmap];0.90[JPT][hapmap];0.81[TSI][hapmap];0.90[AFR][1000 genomes]
rs12806832	0.90[JPT][hapmap]
rs2921331	0.90[JPT][hapmap]
rs3017477	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs3019837	0.81[AFR][1000 genomes]
rs3019840	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56308736	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6592814	0.90[AFR][1000 genomes]
rs7929452	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7932689	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs9734771	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9326493	TMEM134	cis	parietal	SCAN
rs9326493	RCE1	cis	parietal	SCAN
rs9326493	ALDH3B2	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70670000-70731800	Weak transcription	Gastric	stomach
2	chr11:70681800-70701400	Weak transcription	Liver	Liver
3	chr11:70682400-70689800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:70682400-70690400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:70684800-70697000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:70685200-70691600	Weak transcription	Fetal Brain Female	brain
7	chr11:70686000-70690200	Strong transcription	Fetal Intestine Small	intestine
8	chr11:70686400-70690800	Weak transcription	Right Atrium	heart
9	chr11:70688200-70696000	Weak transcription	HepG2	liver
10	chr11:70688800-70690400	Strong transcription	Pancreas	Pancrea
11	chr11:70689200-70692000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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