Variant report

Variant	rs3017477
Chromosome Location	chr11:70685140-70685141
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10793347	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11237649	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11237722	1.00[GIH][hapmap];0.90[JPT][hapmap]
rs12806832	0.90[JPT][hapmap]
rs2921331	0.91[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap]
rs3017499	0.80[MEX][hapmap]
rs3019840	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56308736	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929452	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932689	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9326493	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9734771	0.83[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3017477	CCS	cis	cerebellum	SCAN
rs3017477	TMEM134	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70670000-70731800	Weak transcription	Gastric	stomach
2	chr11:70673000-70688800	Weak transcription	Pancreas	Pancrea
3	chr11:70678400-70686200	Strong transcription	HepG2	liver
4	chr11:70681800-70701400	Weak transcription	Liver	Liver
5	chr11:70682200-70685200	ZNF genes & repeats	Fetal Stomach	stomach
6	chr11:70682400-70689800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:70682400-70690400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:70683200-70686000	ZNF genes & repeats	Fetal Intestine Small	intestine
9	chr11:70684000-70687400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:70684800-70697000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:70685000-70685200	Enhancers	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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