Variant report

Variant	rs12073313
Chromosome Location	chr1:165883858-165883859
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:165840547..165841314-chr1:165883188..165884015,2	MCF-7	breast:
2	chr1:165372904..165373771-chr1:165883155..165884105,2	K562	blood:
3	chr1:165686346..165688021-chr1:165883094..165884168,12	K562	blood:
4	chr1:165840370..165840880-chr1:165883101..165884091,2	MCF-7	breast:
5	chr1:165686907..165688202-chr1:165883135..165884063,6	MCF-7	breast:
6	chr1:165570586..165571293-chr1:165883467..165884080,3	MCF-7	breast:
7	chr1:165737165..165740400-chr1:165883348..165886412,3	MCF-7	breast:
8	chr1:165665933..165668609-chr1:165882779..165884412,2	K562	blood:
9	chr1:31621681..31622201-chr1:165883456..165884048,2	MCF-7	breast:
10	chr1:165570516..165571146-chr1:165883471..165884311,2	MCF-7	breast:
11	chr1:165569014..165571063-chr1:165883495..165885234,2	K562	blood:
12	chr1:165686841..165687811-chr1:165882955..165884387,12	MCF-7	breast:
13	chr1:165570583..165571677-chr1:165883154..165884275,9	K562	blood:
14	chr1:165876437..165878779-chr1:165881882..165884528,2	K562	blood:
15	chr1:165567537..165571496-chr1:165881949..165885234,3	K562	blood:
16	chr1:165796287..165798241-chr1:165882942..165884861,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000224358	Chromatin interaction
ENSG00000215838	Chromatin interaction
ENSG00000143183	Chromatin interaction
ENSG00000143179	Chromatin interaction
ENSG00000143149	Chromatin interaction
ENSG00000236206	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10494450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12063037	0.85[AFR][1000 genomes]
rs12064661	0.80[AFR][1000 genomes]
rs12067209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12070406	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12091018	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16853049	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6665795	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73031469	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73031473	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73031476	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7532050	1.00[AMR][1000 genomes]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165858600-165902400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:165876400-165884200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:165879200-165886200	Enhancers	Stomach Mucosa	stomach
4	chr1:165879400-165884400	Weak transcription	Pancreas	Pancrea
5	chr1:165879400-165894600	Weak transcription	Aorta	Aorta
6	chr1:165879800-165885000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:165880000-165885200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:165880000-165888400	Weak transcription	Spleen	Spleen
9	chr1:165880600-165889000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr1:165880600-165894200	Weak transcription	Right Atrium	heart
11	chr1:165880800-165902600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr1:165881000-165884400	Weak transcription	GM12878-XiMat	blood
13	chr1:165881000-165885000	Weak transcription	Gastric	stomach
14	chr1:165881000-165886800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr1:165881000-165887200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr1:165881200-165884000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr1:165881200-165884800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr1:165881200-165885200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr1:165881200-165885200	Enhancers	HepG2	liver
20	chr1:165881600-165884400	Weak transcription	Small Intestine	intestine
21	chr1:165881800-165888400	Weak transcription	Fetal Intestine Small	intestine
22	chr1:165882200-165885200	Weak transcription	Esophagus	oesophagus
23	chr1:165882200-165889200	Weak transcription	Fetal Brain Female	brain
24	chr1:165882200-165889400	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr1:165882200-165894200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr1:165882400-165884200	Weak transcription	Fetal Stomach	stomach
27	chr1:165882400-165884600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr1:165883200-165885200	Enhancers	HSMM	muscle
29	chr1:165883400-165884600	Weak transcription	Duodenum Mucosa	Duodenum
30	chr1:165883400-165884600	Weak transcription	Fetal Muscle Leg	muscle
31	chr1:165883600-165884600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr1:165883600-165884600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr1:165883600-165884600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr1:165883600-165884600	Weak transcription	HMEC	breast
35	chr1:165883600-165884800	Weak transcription	Hela-S3	cervix
36	chr1:165883600-165885000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr1:165883600-165885000	Weak transcription	Fetal Heart	heart
38	chr1:165883600-165888400	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr1:165883600-165896400	Weak transcription	Dnd41	blood
40	chr1:165883800-165884200	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr1:165883800-165884200	Weak transcription	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links