Variant report

Variant	rs16853049
Chromosome Location	chr1:165887684-165887685
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10494450	0.87[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12063037	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12064661	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12067209	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12070406	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12073313	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12084653	1.00[MEX][hapmap]
rs12091018	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6665795	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6684584	1.00[MEX][hapmap]
rs73031469	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73031473	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73031476	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7532050	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872509	chr1:165885147-165917109	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165858600-165902400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:165879400-165894600	Weak transcription	Aorta	Aorta
3	chr1:165880000-165888400	Weak transcription	Spleen	Spleen
4	chr1:165880600-165889000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr1:165880600-165894200	Weak transcription	Right Atrium	heart
6	chr1:165880800-165902600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr1:165881800-165888400	Weak transcription	Fetal Intestine Small	intestine
8	chr1:165882200-165889200	Weak transcription	Fetal Brain Female	brain
9	chr1:165882200-165889400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr1:165882200-165894200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr1:165883600-165888400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr1:165883600-165896400	Weak transcription	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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