Variant report

Variant	rs73031476
Chromosome Location	chr1:165878911-165878912
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165797327..165800051-chr1:165876668..165879627,3	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10494450	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12063037	0.88[AFR][1000 genomes]
rs12064661	0.83[AFR][1000 genomes]
rs12067209	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12070406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12073313	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12091018	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16853049	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6665795	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73031469	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73031473	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7532050	1.00[AMR][1000 genomes]

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165854600-165883000	Weak transcription	Colon Smooth Muscle	Colon
2	chr1:165858200-165881200	Strong transcription	Dnd41	blood
3	chr1:165858400-165881000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:165858600-165902400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr1:165859000-165881000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:165859200-165880400	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr1:165859200-165881000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr1:165859400-165880200	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr1:165859400-165880400	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr1:165859400-165880600	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr1:165859400-165880600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr1:165859600-165880600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
13	chr1:165860000-165880200	Strong transcription	H1 Cell Line	embryonic stem cell
14	chr1:165868400-165880200	Strong transcription	A549	lung
15	chr1:165870200-165882800	Weak transcription	Fetal Brain Male	brain
16	chr1:165870400-165879400	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr1:165870800-165880800	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr1:165871000-165883200	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr1:165871800-165880000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr1:165871800-165880800	Strong transcription	Fetal Stomach	stomach
21	chr1:165871800-165882200	Strong transcription	Fetal Brain Female	brain
22	chr1:165872000-165879000	Strong transcription	Rectal Mucosa Donor 31	rectum
23	chr1:165872000-165879200	Strong transcription	Fetal Intestine Small	intestine
24	chr1:165872000-165879600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr1:165872000-165879800	Strong transcription	K562	blood
26	chr1:165872200-165879200	Strong transcription	Fetal Intestine Large	intestine
27	chr1:165872400-165883200	Weak transcription	Brain Anterior Caudate	brain
28	chr1:165872400-165883200	Weak transcription	Brain Substantia Nigra	brain
29	chr1:165872800-165883400	Weak transcription	Fetal Kidney	kidney
30	chr1:165873000-165880000	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr1:165873200-165879600	Strong transcription	Placenta	Placenta
32	chr1:165873200-165881000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr1:165873400-165879400	Strong transcription	NHLF	lung
34	chr1:165873400-165879600	Strong transcription	HSMMtube	muscle
35	chr1:165873600-165879200	Weak transcription	Stomach Mucosa	stomach
36	chr1:165873600-165879800	Strong transcription	Muscle Satellite Cultured Cells	--
37	chr1:165873600-165879800	Weak transcription	Fetal Heart	heart
38	chr1:165873600-165880400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr1:165873600-165881000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr1:165874000-165879800	Strong transcription	HSMM	muscle
41	chr1:165874000-165881200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr1:165874000-165881800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr1:165874200-165880200	Strong transcription	HMEC	breast
44	chr1:165874200-165880600	Strong transcription	Fetal Muscle Trunk	muscle
45	chr1:165874400-165879600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr1:165874800-165879200	Strong transcription	Stomach Smooth Muscle	stomach
47	chr1:165874800-165879400	Strong transcription	Sigmoid Colon	Sigmoid Colon
48	chr1:165874800-165879800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr1:165874800-165880600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr1:165874800-165881200	Strong transcription	Cortex derived primary cultured neurospheres	brain

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