Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:103322613..103325550-chr1:103327919..103330236,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11164627	0.82[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11164656	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12073619	1.00[EUR][1000 genomes]
rs12079176	1.00[EUR][1000 genomes]
rs12085141	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12086094	0.82[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12095952	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13374198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57009972	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57843906	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58181035	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58451159	1.00[EUR][1000 genomes]
rs59050890	1.00[EUR][1000 genomes]
rs59523110	1.00[EUR][1000 genomes]
rs59806116	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60207059	1.00[EUR][1000 genomes]
rs61120351	1.00[EUR][1000 genomes]
rs72996278	1.00[EUR][1000 genomes]
rs73000214	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9988414	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830882	chr1:103192683-103355802	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv522922	chr1:103305021-103764640	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103324800-103334200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:103328400-103329800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr1:103328600-103329000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr1:103328600-103329800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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