Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:103323089..103325462-chr8:4135925..4138695,2	MCF-7	breast:
2	chr1:103322613..103325550-chr1:103327919..103330236,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11164627	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11164656	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12073619	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12074087	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12079176	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12085141	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12086094	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12095952	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13374198	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57009972	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57843906	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58181035	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58451159	1.00[EUR][1000 genomes]
rs59050890	1.00[EUR][1000 genomes]
rs59523110	1.00[EUR][1000 genomes]
rs59806116	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60207059	1.00[EUR][1000 genomes]
rs61120351	1.00[EUR][1000 genomes]
rs72996278	1.00[EUR][1000 genomes]
rs9988414	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830882	chr1:103192683-103355802	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv522922	chr1:103305021-103764640	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103318400-103324000	Weak transcription	Osteobl	bone
2	chr1:103318400-103324600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:103320600-103324000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:103322200-103323800	Weak transcription	NHDF-Ad	bronchial
5	chr1:103322600-103323800	Weak transcription	Fetal Intestine Large	intestine
6	chr1:103323000-103324000	Weak transcription	Fetal Intestine Small	intestine
7	chr1:103323600-103324400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:103323600-103325000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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