Variant report

Variant	rs12095952
Chromosome Location	chr1:103303768-103303769
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11164627	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11164656	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12073619	1.00[EUR][1000 genomes]
rs12074087	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12079176	1.00[EUR][1000 genomes]
rs12085141	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12086094	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13374198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57009972	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58451159	1.00[EUR][1000 genomes]
rs59523110	1.00[EUR][1000 genomes]
rs59806116	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60207059	1.00[EUR][1000 genomes]
rs61120351	1.00[EUR][1000 genomes]
rs72996278	1.00[EUR][1000 genomes]
rs73000214	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9988414	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830882	chr1:103192683-103355802	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103302200-103305600	Enhancers	Placenta	Placenta
2	chr1:103302400-103304400	Enhancers	Placenta Amnion	Placenta Amnion
3	chr1:103302800-103303800	Weak transcription	Fetal Intestine Large	intestine
4	chr1:103303400-103303800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr1:103303600-103303800	Enhancers	Fetal Intestine Small	intestine
6	chr1:103303600-103304000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:103303600-103304000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:103303600-103304800	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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